PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 467aa    MW: 53175.6 Da    PI: 7.45
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-10418465347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W++ E++ l  +vk++G+g+W+ I +t       Rt+ ++k++w++ 
   XP_016450196.1 418 KWSALEEDTLRTGVKKYGSGNWTHILNTYRdifVVRTAGDLKDKWRNM 465
                      8********************************88***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.381411467IPR017930Myb domain
SuperFamilySSF466891.87E-13413466IPR009057Homeodomain-like
SMARTSM007170.002415467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10417466IPR009057Homeodomain-like
PfamPF002497.0E-8418465IPR001005SANT/Myb domain
CDDcd116603.68E-16418466No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDVDISRWIL EFILRQPLDD SILNALIHTI PLPNDNLNLK KALILRKLES EISNGSVTEK  60
ILELLELFEE LDHQEGTETL KELKSAYCAV AVECTVKFLN EKGAESDKGK YFEAVKRIWK  120
KRINLMEKME NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVMVFVREAK  180
ERIGPPFLDV VAETYRSDDT VRAFFGGVNE QGTCRNNVRE VRKGNALPRQ KHVAFRRTRG  240
ALARTCGGVR ISDSIELGLD ASGRQDFLPT PEIEKAQEAL KLSSMELRAM VKDPLPDVLQ  300
FAETLSSLVR DHMGHQPAEN NSDRAPYPVV ASSRMDQVNG ENCEAQRNCH PSAASKPDLM  360
NRKSAAHTSE WDDSADELIE GSPSGARRFT LPSPKRTKIS PLKKYEFKKF TTRRKPTKWS  420
ALEEDTLRTG VKKYGSGNWT HILNTYRDIF VVRTAGDLKD KWRNMMS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603867.10.0PREDICTED: uncharacterized protein LOC104098761
RefseqXP_016450196.10.0PREDICTED: uncharacterized protein LOC107775036
TrEMBLA0A0V0IEV80.0A0A0V0IEV8_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000781280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-22TRF-like 5